My top three started out with a soft top, bed rack and roof rack, but I've since changed my mind on the soft top. I just installed my roof rack (Victory 4x4) and I'm waiting for the bed rack to ship. After that, I'm looking to get a few of the mounting plates for gear. Eventually I'll get a tent for atop the bed rack.
That's really the only functional mods I'm currently planning. There's a few cosmetic things I was thinking of, but that'll just come with overtime. I don't think I'll have to change my suspension any time soon. Saturday I went out and it worked well enough for what I plan on doing with it, which is taking bumpy dirt and gravel roads out to camp. I don't plan on going out and doing all that fancy flexing you see some of these beasts doing.